STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
DACC_ECOLI
P08506
dacC
b0839 JW0823
D-alanyl-D-alanine carboxypeptidase dacC (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (Penicillin-binding protein 6) (PBP-6)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell inner membrane | Peripheral membrane protein
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
CPXP_ECOLI
P0AE85
cpxP

yiiO

b4484 JW5558
Periplasmic protein CpxP
Peripheral inner membrane protein facing the periplasm
F2
N/A
Periplasm
Membrane associated (Experimental)
 
 
SEC
 
 
yes
yes
DACA_ECOLI
P0AEB2
dacA

pfv

b0632 JW0627
D-alanyl-D-alanine carboxypeptidase dacA (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (Beta-lactamase) (EC 3.5.2.6) (Penicillin-binding protein 5) (PBP-5)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell inner membrane | Peripheral membrane protein | Cytoplasmic side
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
IAP_ECOLI
P10423
iap
b2753 JW2723
Alkaline phosphatase isozyme conversion protein (EC 3.4.11.-)
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Membrane associated (Experimental)
 
 
SEC
 
 
yes
yes
PRC_ECOLI
P23865
prc

tsp

b1830 JW1819
Tail-specific protease (EC 3.4.21.102) (C-terminal-processing peptidase) (PRC protein) (Protease Re)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Cell inner membrane | Peripheral membrane protein | Periplasmic side
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
DACB_ECOLI
P24228
dacB
b3182 JW3149
D-alanyl-D-alanine carboxypeptidase dacB (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (D-alanyl-D-alanine endopeptidase) (DD-endopeptidase) (EC 3.4.21.-) (Penicillin-binding protein 4) (PBP-4)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Periplasm
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
YADE_ECOLI
P31666
yadE
b0130 JW0126
Uncharacterized protein yadE
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
DACD_ECOLI
P33013
dacD

phsE yeeC

b2010 JW5329
D-alanyl-D-alanine carboxypeptidase dacD (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (Penicillin-binding protein 6b) (PBP-6b)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Cell inner membrane | Peripheral membrane protein
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
CUSB_ECOLI
P77239
cusB

ylcD

b0574 JW0563
Cation efflux system protein cusB
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Membrane anchored
 
 
SEC
 
 
yes
yes
YDGA_ECOLI
P77804
ydgA
b1614 JW1606
Protein ydgA
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell inner membrane | Peripheral membrane protein | Periplasmic side
Cytoplasmic
 
 
SEC
 
 
yes
yes
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