STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli K-12 (MG1655) Tat secretome

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
FHUD_ECOLI
P07822
fhuD
b0152 JW0148
Iron(3+)-hydroxamate-binding protein fhuD (Ferric hydroxamate uptake protein D) (Ferrichrome-binding periplasmic protein) (Iron(III)-hydroxamate-binding protein fhuD)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
YNFG_ECOLI
P0AAJ1
ynfG
b1589 JW1581
Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO reductase iron-sulfur subunit ynfG)
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Periplasmic
 
 
TAT piggyback
 
 
yes
yes
HYBA_ECOLI
P0AAJ8
hybA
b2996 JW2964
Hydrogenase-2 operon protein hybA
Peripheral inner membrane protein facing the periplasm
F2
IM (predicted)
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
NRFC_ECOLI
P0AAK7
nrfC

yjcJ

b4072 JW4033
Protein nrfC
Periplasmic
G
N/A
 
Periplasmic (Experimental)
 
 
TAT
 
 
yes
yes
NAPG_ECOLI
P0AAL3
napG

yojA yojB

b2205 JW2193
Ferredoxin-type protein napG
Periplasmic
G
N/A
 
Periplasmic (Experimental)
 
 
TAT
 
 
yes
yes
YCBK_ECOLI
P0AB06
ycbK
b0926 JW0909
Uncharacterized protein ycbK
Periplasmic
G
N/A
 
Periplasmic
 
 
TAT
 
 
yes
yes
YFHG_ECOLI
P0AD44
yfhG
b2555 JW2539
Uncharacterized protein yfhG
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
TAT,SEC
 
LOL
yes
yes
MBHM_ECOLI
P0ACE0
hybC
b2994 JW2962
Hydrogenase-2 large chain (HYD2) (EC 1.12.99.6) (Membrane-bound hydrogenase 2 large subunit) (NiFe hydrogenase)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell membrane | Peripheral membrane protein
Periplasmic (Experimental)
 
 
TAT piggyback
 
 
yes
yes
DMSA_ECOLI
P18775
dmsA
b0894 JW5118
Anaerobic dimethyl sulfoxide reductase chain A (DMSO reductase) (EC 1.8.99.-)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell membrane | Peripheral membrane protein | Cytoplasmic side
Periplasmic (Experimental)
 
DmsD
TAT,SEC
 
 
yes
yes
DMSB_ECOLI
P18776
dmsB
b0895 JW0878
Anaerobic dimethyl sulfoxide reductase chain B (DMSO reductase iron-sulfur subunit)
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Cytoplasmic
 
 
TAT piggyback
 
 
yes
yes
FDNG_ECOLI
P24183
fdnG
b1474 JW1470
Formate dehydrogenase, nitrate-inducible, major subunit (EC 1.2.1.2) (Anaerobic formate dehydrogenase major subunit) (Formate dehydrogenase-N subunit alpha) (FDH-N subunit alpha)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Periplasm
Membrane associated (Experimental)
 
 
TAT
 
 
no
yes
FTSP_ECOLI
P26648
ftsP

sufI

b3017 JW2985
Protein sufI
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
no
yes
EFEB_ECOLI
P31545
efeB

ycdB

b1019 JW1004
Peroxidase ycdB (EC 1.11.1.-)
Periplasmic
G
N/A
Periplasm
Periplasmic
 
 
TAT,SEC
 
 
yes
yes
FDOG_ECOLI
P32176
fdoG
b3894 JW3865
Formate dehydrogenase-O major subunit (EC 1.2.1.2) (Aerobic formate dehydrogenase major subunit) (FDH-Z subunit alpha) (Formate dehydrogenase-O subunit alpha)
Periplasmic
G
Soluble IM Fraction
Periplasm
Periplasmic (Experimental)
 
 
TAT
 
 
no
yes
TORA_ECOLI
P33225
torA
b0997 JW0982
Trimethylamine-N-oxide reductase 1 (TMAO reductase 1) (Trimethylamine oxidase 1) (EC 1.7.2.3)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT
 
 
yes
yes
NAPA_ECOLI
P33937
napA

yojC yojD yojE

b2206 JW2194
Periplasmic nitrate reductase (EC 1.7.99.4)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT
 
 
yes
yes
AMIA_ECOLI
P36548
amiA

yfeE

b2435 JW2428
Probable N-acetylmuramoyl-L-alanine amidase AmiA (EC 3.5.1.28)
Periplasmic
G
N/A
Secreted
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
CUEO_ECOLI
P36649
cueO

yacK

b0123 JW0119
Blue copper oxidase cueO (Copper efflux oxidase)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
OPGD_ECOLI
P40120
mdoD

opgD ydcG yzzZ

b1424 JW1420
Glucans biosynthesis protein D
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
no
yes
TORZ_ECOLI
P46923
torZ

bisZ

b1872 JW1861
Trimethylamine-N-oxide reductase 2 (TMAO reductase 2) (Trimethylamine oxidase 2) (EC 1.7.2.3)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
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