STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Tat secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Tat secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YNFG_ECOLI
P0AAJ1
ynfG
b1589 JW1581
Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO reductase iron-sulfur subunit ynfG)
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Periplasmic
 
 
TAT piggyback
 
 
yes
yes
HYBA_ECOLI
P0AAJ8
hybA
b2996 JW2964
Hydrogenase-2 operon protein hybA
Peripheral inner membrane protein facing the periplasm
F2
IM (predicted)
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
MBHM_ECOLI
P0ACE0
hybC
b2994 JW2962
Hydrogenase-2 large chain (HYD2) (EC 1.12.99.6) (Membrane-bound hydrogenase 2 large subunit) (NiFe hydrogenase)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell membrane | Peripheral membrane protein
Periplasmic (Experimental)
 
 
TAT piggyback
 
 
yes
yes
DMSA_ECOLI
P18775
dmsA
b0894 JW5118
Anaerobic dimethyl sulfoxide reductase chain A (DMSO reductase) (EC 1.8.99.-)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell membrane | Peripheral membrane protein | Cytoplasmic side
Periplasmic (Experimental)
 
DmsD
TAT,SEC
 
 
yes
yes
DMSB_ECOLI
P18776
dmsB
b0895 JW0878
Anaerobic dimethyl sulfoxide reductase chain B (DMSO reductase iron-sulfur subunit)
Peripheral inner membrane protein facing the periplasm
F2
N/A
 
Cytoplasmic
 
 
TAT piggyback
 
 
yes
yes
FDNG_ECOLI
P24183
fdnG
b1474 JW1470
Formate dehydrogenase, nitrate-inducible, major subunit (EC 1.2.1.2) (Anaerobic formate dehydrogenase major subunit) (Formate dehydrogenase-N subunit alpha) (FDH-N subunit alpha)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Periplasm
Membrane associated (Experimental)
 
 
TAT
 
 
no
yes
MBHT_ECOLI
P69741
hybO

yghV

b2997 JW2965
Hydrogenase-2 small chain (HYD2) (EC 1.12.99.6) (Membrane-bound hydrogenase 2 small subunit) (NiFe hydrogenase)
Peripheral inner membrane protein facing the periplasm
F2
IM (predicted)
Cell membrane | Peripheral membrane protein | Periplasmic sidePeriplasm
Membrane anchored (Experimental)
 
TF
TAT,SEC
 
 
yes
yes
YEDY_ECOLI
P76342
yedY
b1971 JW1954
Sulfoxide reductase catalytic subunit yedY (EC 1.8.-.-)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Periplasm
Membrane anchored (Experimental)
 
 
TAT,SEC
 
 
no
yes
YNFE_ECOLI
P77374
ynfE
b1587 JW1579
Putative dimethyl sulfoxide reductase chain ynfE (DMSO reductase) (EC 1.8.99.-)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Cell membrane | Peripheral membrane protein | Cytoplasmic side
Periplasmic
 
 
TAT
 
 
yes
yes
YNFF_ECOLI
P77783
ynfF
b1588 JW5260
Probable dimethyl sulfoxide reductase chain ynfF (DMSO reductase) (EC 1.8.99.-)
Peripheral inner membrane protein facing the periplasm
F2
N/A
Cell membrane | Peripheral membrane protein | Cytoplasmic side
Periplasmic
 
 
TAT,SEC
 
 
yes
yes
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