E.coli K-12 (MG1655) Sec Membranome

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Nucleoid Cytoplasmic Peripheral inner membrane protein facing the cytoplasm Integral inner membrane Ribosomal Inner membrane lipoprotein Peripheral inner membrane protein facing the periplasm Periplasmic Peripheral outer membrane protein facing the periplasm Outer membrane β-barrel protein Peripheral outer membrane protein facing the extra-cellular space Extra-cellular Outer membrane lipoprotein

Protein Information Subcellular Localization Targeting/Export System
Protein ID /
Accession #
(UniProt)
Gene Name
(UniProt)
Protein Name
(UniProt)
Order
Locus Name
Protein Name
(STEPdb)
Reference structure
Topology Class
Full name
(STEPdb)
Symbol
(STEPdb)
Topology Class
UniProt
Extracellular Appendage First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YKFM_ECOLI
A5A605
ykfM Uncharacterized protein YkfM b4586 integral IM protein (SEC in IM), YkfM ab initio Zhang model E14116 (score: 0.604) Integral Inner Membrane, cytoplasmic side B Membrane - SRP SEC - - no yes
YNCL_ECOLI
A5A615
yncL Uncharacterized protein YncL b4598 JW1439.1 integral IM protein (SEC in IM), YncL TBM Zhang model E10808 (score: 0.575) Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
YNEM_ECOLI
A5A616
yneM Small protein MgtS b4599 JW1527.1 integral IM protein (SEC in IM), Small MgtS 5oqt PDB ID, chain C, for protein A5A616 Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
YDGU_ECOLI
A5A617
ydgU Uncharacterized protein YdgU b4601 JW1589 integral IM protein (SEC in IM), YdgU TBM Zhang model E10563 (score: 0.519) Integral Inner Membrane, cytoplasmic side B - - SRP SEC - - no yes
YNHF_ECOLI
A5A618
ynhF Uncharacterized protein YnhF b4602 JW1649.1 integral IM protein (SEC in IM), YnhF TBM Zhang model E10817 (score: 0.633) Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
DINQ_ECOLI
A5A624
dinQ Uncharacterized protein DinQ b4613 integral IM protein (SEC in IM), DinQ TBM Zhang model E10066 (score: 0.672) Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
TISB_ECOLI
A5A627
tisB Small toxic protein TisB (LexA-regulated protein TisB) b4618 JW3649 integral IM protein (SEC in IM), Small toxin TisB TBM Zhang model E10402 (score: 0.629) Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no no
YTCA_ECOLI
A5A630
ytcA Uncharacterized protein YtcA b4622 integral IM protein (SEC in IM), YtcA TBM Zhang model E10873 (score: 0.378) Integral Inner Membrane, cytoplasmic side B Cell membrane - - SEC - - no yes
YTHA_ECOLI
A8DYQ1
ythA Uncharacterized protein YthA b4655 JW5769.1 integral IM protein (SEC in IM), YthA TBM Zhang model E10878 (score: 0.62) Integral Inner Membrane, cytoplasmic side B Cell inner membrane - - SEC - - no yes
YKGR_ECOLI
C1P5Z8
ykgR Uncharacterized membrane protein YkgR b4671 JW5035.1 integral IM protein (SEC in IM), YkgR no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
YMIB_ECOLI
C1P5Z9
ymiB Putative protein YmiB b4672 JW1278.1 integral IM protein (SEC in IM), Putative YmiB TBM Zhang model E10799 (score: 0.617) Integral Inner Membrane, cytoplasmic side B Membrane - SRP SEC - - no yes
YOAK_ECOLI
C1P602
yoaK Uncharacterized membrane protein YoaK b4676 JW5292.1 integral IM protein (SEC-YidC in IM), YoaK no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC-YidC - - no yes
YOAJ_ECOLI
C1P603
yoaJ Uncharacterized protein YoaJ b4675 JW5292.2 integral IM protein (SEC-YidC in IM), YoaJ no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC-YidC - - no yes
YOHP_ECOLI
C1P609
yohP Uncharacterized membrane protein YohP b4679 JW5358.1 integral IM protein (SEC in IM), YohP no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
YPDK_ECOLI
C1P610
ypdK Uncharacterized membrane protein YpdK b4680 JW2375.1 integral IM protein (SEC in IM), YpdK no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - SRP SEC - - no yes
SHOB_ECOLI
C1P611
shoB Small toxic protein ShoB b4687 JW2546.1 integral IM protein (SEC in IM), Small toxin ShoB TBM Zhang model E10379 (score: 0.636) Integral Inner Membrane, cytoplasmic side B Membrane - SRP SEC - - no yes
YQFG_ECOLI
C1P614
yqfG Uncharacterized protein YqfG b4684 JW5470.1 integral IM protein (SEC in IM), YqfG no structure available Integral Inner Membrane, cytoplasmic side B - - SRP SEC - - no yes
IBSD_ECOLI
C1P616
ibsD Small toxic protein IbsD b4664 JW3023.1 integral IM protein (SEC in IM), Small toxin IbsD TBM Zhang model E11886 (score: 0.533) Integral Inner Membrane, cytoplasmic side B Membrane - - SEC - - no yes
PMRR_ECOLI
G3MTW7
pmrR Putative membrane protein PmrR b4703 JW4072.1 integral IM protein (SEC in IM), Putative PmrR no structure available Integral Inner Membrane, cytoplasmic side B Cell inner membrane - - SEC - - no -
PHSM_ECOLI
P00490
malP Maltodextrin phosphorylase (EC 2.4.1.1) b3417 JW5689 integral IM protein (SEC in IM), Maltodextrin phosphorylase MalP 1l5w PDB ID, chain A, for protein P00490 Integral Inner Membrane, cytoplasmic side B - - - SEC - - yes yes
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